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Oryza sativa QTL "AQEE001" (filled grain percentage)
| QTL Accession ID | AQEE001 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | FGRPCENT | ||||
| Trait Name | filled grain percentage | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||
| Chromosome | 8 | ||||
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 26,492,117-27,825,271 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 8 | 119.6-144.4 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQEE001 | 8 | 119.6 | 144.4 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM502 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | CDO99 | RFLP | Avena sativa | qtl_marker |
| To | RM264 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM210 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000448) | Septiningsih-E-M et al., 2003 (IAGP) |
| Plant Structure | (PO:0009001) | Septiningsih-E-M et al., 2003 (SM) |
| Plant Growth and Development Stage | (PO:0007038 ) | Septiningsih-E-M et al., 2003 (SM) |
| Growth Stage | (GRO:0007045) | Septiningsih-E-M et al., 2003 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Database Cross-References (1)
SNPs (7,039)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr8 | 26,492,117 | 27,825,271 | ~160K SNPs x 20 accessions (McNally 2... | 472 | Search for SNPs |
| chr8 | 26,492,117 | 27,825,271 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
| chr8 | 26,492,117 | 27,825,271 | Huang X, et al, Nat Genetics 2010 Nov... | 3,212 | Search for SNPs |
| chr8 | 26,492,117 | 27,825,271 | RiceDiversity 44K SNP assay, 34 trait... | 3,212 | Search for SNPs |
| chr8 | 26,492,117 | 27,825,271 | RiceDiversity 44K SNP assay, 34 trait... | 136 | Search for SNPs |
