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Oryza sativa QTL "AQED025" (panicle length)
| QTL Accession ID | AQED025 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | PNLG | ||||||
| Trait Name | panicle length | ||||||
| Published Symbol | pl10.2 | ||||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||||
| Chromosome | 10 | ||||||
| Comments | The QTL was detected using phenotypic data of the field experiment at the Semplak Experiment Station in Bogor, Indonesia. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 22,243,157-23,043,407 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 10 | 110.7-126.7 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQED025 | 10 | 110.7 | 126.7 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM228 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM496 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM590 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM591 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM304 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000040) | Septiningsih-E-M et al., 2003 (IAGP) |
| Plant Structure | (PO:0009049) | Septiningsih-E-M et al., 2003 (SM) |
| Plant Growth and Development Stage | (PO:0007041) | Septiningsih-E-M et al., 2003 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007044) | Septiningsih-E-M et al., 2003 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Database Cross-References (1)
SNPs (5,154)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr10 | 22,243,157 | 23,043,407 | ~160K SNPs x 20 accessions (McNally 2... | 324 | Search for SNPs |
| chr10 | 22,243,157 | 23,043,407 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
| chr10 | 22,243,157 | 23,043,407 | Huang X, et al, Nat Genetics 2010 Nov... | 2,373 | Search for SNPs |
| chr10 | 22,243,157 | 23,043,407 | RiceDiversity 44K SNP assay, 34 trait... | 2,373 | Search for SNPs |
| chr10 | 22,243,157 | 23,043,407 | RiceDiversity 44K SNP assay, 34 trait... | 80 | Search for SNPs |
