QTL Accession ID | AQED022 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | PNLG | ||||||
Trait Name | panicle length | ||||||
Published Symbol | pl3.1 | ||||||
Trait Synonym(s) |
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Trait Category | Anatomy | ||||||
Chromosome | 3 | ||||||
Comments | The QTL was detected using phenotypic data of the field experiment at the Semplak Experiment Station in Bogor, Indonesia. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 12,407,382-22,339,895 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 3 | 80.3-112 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQED022 | 3 | 80.3 | 112 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM282 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RZ672 | RFLP | Oryza sativa | qtl_marker |
To | RZ22 | RFLP | Oryza sativa | qtl_marker |
To | RM251 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RZ474 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000040) | Septiningsih-E-M et al., 2003 (IAGP) |
Plant Structure | (PO:0009049) | Septiningsih-E-M et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007041) | Septiningsih-E-M et al., 2003 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007044) | Septiningsih-E-M et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 12,407,382 | 22,339,895 | ~160K SNPs x 20 accessions (McNally 2... | 3,965 | Search for SNPs |
chr3 | 12,407,382 | 22,339,895 | '1536 chip' - 1311 SNPs x 395 rice ac... | 29 | Search for SNPs |
chr3 | 12,407,382 | 22,339,895 | Huang X, et al, Nat Genetics 2010 Nov... | 23,019 | Search for SNPs |
chr3 | 12,407,382 | 22,339,895 | RiceDiversity 44K SNP assay, 34 trait... | 23,019 | Search for SNPs |
chr3 | 12,407,382 | 22,339,895 | RiceDiversity 44K SNP assay, 34 trait... | 961 | Search for SNPs |