QTL Accession ID | AQED017 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | PTHT | ||||
Trait Name | plant height | ||||
Published Symbol | ph11.1 | ||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||
Chromosome | 11 | ||||
Comments | The QTL was detected using phenotypic data of the field experiment at the Sukamandi Research Institute for Rice in Sukamandi, Indonesia. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 383,711-4,073,313 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 11 | 0-24 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQED017 | 11 | 0 | 24 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM286 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM167 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM202 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000207) | Septiningsih-E-M et al., 2003 (IAGP) |
Plant Structure | (PO:0009006) | Septiningsih-E-M et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Septiningsih-E-M et al., 2003 (SM) |
(PO:0007130) | Septiningsih-E-M et al., 2003 (SM) | |
Growth Stage | (GRO:0007139) | Septiningsih-E-M et al., 2003 (SM) |
(GRO:0007140) | Septiningsih-E-M et al., 2003 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 383,711 | 4,073,313 | ~160K SNPs x 20 accessions (McNally 2... | 1,462 | Search for SNPs |
chr11 | 383,711 | 4,073,313 | '1536 chip' - 1311 SNPs x 395 rice ac... | 10 | Search for SNPs |
chr11 | 383,711 | 4,073,313 | Huang X, et al, Nat Genetics 2010 Nov... | 8,415 | Search for SNPs |
chr11 | 383,711 | 4,073,313 | RiceDiversity 44K SNP assay, 34 trait... | 8,415 | Search for SNPs |
chr11 | 383,711 | 4,073,313 | RiceDiversity 44K SNP assay, 34 trait... | 312 | Search for SNPs |