QTL Accession ID | AQED016 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | PTHT | ||||
Trait Name | plant height | ||||
Published Symbol | ph10.1 | ||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||
Chromosome | 10 | ||||
Comments | The QTL was detected using phenotypic data of the field experiment at the Sukamandi Research Institute for Rice in Sukamandi, Indonesia. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 1,818,800-9,747,605 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 10 | 0-31.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQED016 | 10 | 0 | 31.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM474 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM311 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM239 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM630 | SSR | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000207) | Septiningsih-E-M et al., 2003 (IAGP) |
Plant Structure | (PO:0009006) | Septiningsih-E-M et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Septiningsih-E-M et al., 2003 (SM) |
(PO:0007130) | Septiningsih-E-M et al., 2003 (SM) | |
Growth Stage | (GRO:0007139) | Septiningsih-E-M et al., 2003 (SM) |
(GRO:0007140) | Septiningsih-E-M et al., 2003 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr10 | 1,818,800 | 9,747,605 | ~160K SNPs x 20 accessions (McNally 2... | 2,264 | Search for SNPs |
chr10 | 1,818,800 | 9,747,605 | '1536 chip' - 1311 SNPs x 395 rice ac... | 30 | Search for SNPs |
chr10 | 1,818,800 | 9,747,605 | Huang X, et al, Nat Genetics 2010 Nov... | 17,433 | Search for SNPs |
chr10 | 1,818,800 | 9,747,605 | RiceDiversity 44K SNP assay, 34 trait... | 17,433 | Search for SNPs |
chr10 | 1,818,800 | 9,747,605 | RiceDiversity 44K SNP assay, 34 trait... | 535 | Search for SNPs |