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Oryza sativa QTL "AQED008" (days to maturity)
| QTL Accession ID | AQED008 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | DTMT |
| Trait Name | days to maturity |
| Published Symbol | dtm4.2 |
| Trait Synonym(s) | |
| Trait Category | Development |
| Chromosome | 4 |
| Comments | The QTL was detected using phenotypic data of the field experiment at the Sukamandi Research Institute for Rice in Sukamandi, Indonesia. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 18,824,746-21,242,734 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 4 | 67-105.7 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQED008 | 4 | 67 | 105.7 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM471 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RG788 | RFLP | Oryza sativa | qtl_marker |
| To | RM119 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM628 | SSR | Oryza sativa | qtl_marker |
| To | RM273 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000469) | Septiningsih-E-M et al., 2003 (IAGP) |
| Plant Structure | (PO:0000003) | Septiningsih-E-M et al., 2003 (SM) |
| Plant Growth and Development Stage | (PO:0007038 ) | Septiningsih-E-M et al., 2003 (SM) |
| Growth Stage | (GRO:0007045) | Septiningsih-E-M et al., 2003 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Database Cross-References (1)
SNPs (13,175)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr4 | 18,824,746 | 21,242,734 | ~160K SNPs x 20 accessions (McNally 2... | 1,381 | Search for SNPs |
| chr4 | 18,824,746 | 21,242,734 | '1536 chip' - 1311 SNPs x 395 rice ac... | 11 | Search for SNPs |
| chr4 | 18,824,746 | 21,242,734 | Huang X, et al, Nat Genetics 2010 Nov... | 5,744 | Search for SNPs |
| chr4 | 18,824,746 | 21,242,734 | RiceDiversity 44K SNP assay, 34 trait... | 5,744 | Search for SNPs |
| chr4 | 18,824,746 | 21,242,734 | RiceDiversity 44K SNP assay, 34 trait... | 295 | Search for SNPs |
