![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
QTL Home |
Simple Search |
Power Search |
Help |
Tutorial |
FAQ
Oryza sativa QTL "AQED005" (days to heading)
| QTL Accession ID | AQED005 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | DTHD | ||||
| Trait Name | days to heading | ||||
| Published Symbol | dth11.1 | ||||
| Trait Synonym(s) |
|
||||
| Trait Category | Development | ||||
| Chromosome | 11 | ||||
| Comments | The QTL was detected using phenotypic data of the field experiment at the Sukamandi Research Institute for Rice in Sukamandi, Indonesia. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 4,073,024-17,808,461 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 11 | 24-55.1 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQED005 | 11 | 24 | 55.1 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM167 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM202 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM287 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM209 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM286 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM229 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000137) | Septiningsih-E-M et al., 2003 (IAGP) |
| Plant Structure | (PO:0009049) | Septiningsih-E-M et al., 2003 (SM) |
| Plant Growth and Development Stage | (PO:0007041) | Septiningsih-E-M et al., 2003 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007044) | Septiningsih-E-M et al., 2003 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Database Cross-References (1)
SNPs (75,636)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr11 | 4,073,024 | 17,808,461 | ~160K SNPs x 20 accessions (McNally 2... | 4,639 | Search for SNPs |
| chr11 | 4,073,024 | 17,808,461 | '1536 chip' - 1311 SNPs x 395 rice ac... | 40 | Search for SNPs |
| chr11 | 4,073,024 | 17,808,461 | Huang X, et al, Nat Genetics 2010 Nov... | 34,938 | Search for SNPs |
| chr11 | 4,073,024 | 17,808,461 | RiceDiversity 44K SNP assay, 34 trait... | 34,938 | Search for SNPs |
| chr11 | 4,073,024 | 17,808,461 | RiceDiversity 44K SNP assay, 34 trait... | 1,081 | Search for SNPs |
