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Oryza sativa QTL "AQEC002" (white-backed planthopper resistance)
| QTL Accession ID | AQEC002 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | WBPHRS |
| Trait Name | white-backed planthopper resistance |
| Published Symbol | Wbph8(t) |
| Trait Synonym(s) | |
| Trait Category | Biotic stress |
| Chromosome | 4 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 6,574,396-9,349,985 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNWHU B5/Min63 QTL 2004 | BNL6.32 | 4 | 12.7-13 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQEC002 | 4 | 12.7 | 13 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R288 | RFLP | Oryza sativa | qtl_marker |
| To | RM261 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | C820 | RFLP | Oryza sativa | qtl_marker |
| To | S11182 | RFLP | Oryza sativa | qtl_marker |
| To | R1498 | RFLP | Oryza sativa | qtl_marker |
| To | C140 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000205) | Tan-G-X et al., 2003 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007252) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Tan-G-X et al., 2003 (SM) |
Database Cross-References (1)
SNPs (6,910)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr4 | 6,574,396 | 9,349,985 | ~160K SNPs x 20 accessions (McNally 2... | 510 | Search for SNPs |
| chr4 | 6,574,396 | 9,349,985 | '1536 chip' - 1311 SNPs x 395 rice ac... | 8 | Search for SNPs |
| chr4 | 6,574,396 | 9,349,985 | Huang X, et al, Nat Genetics 2010 Nov... | 3,126 | Search for SNPs |
| chr4 | 6,574,396 | 9,349,985 | RiceDiversity 44K SNP assay, 34 trait... | 3,126 | Search for SNPs |
| chr4 | 6,574,396 | 9,349,985 | RiceDiversity 44K SNP assay, 34 trait... | 140 | Search for SNPs |
