QTL Accession ID | AQEC001 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | WBPHRS |
Trait Name | white-backed planthopper resistance |
Published Symbol | Wbph7(t) |
Trait Synonym(s) | |
Trait Category | Biotic stress |
Chromosome | 3 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 35,439,314-35,710,936 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNWHU B5/Min63 QTL 2004 | BNL6.32 | 3 | 144.4-145.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEC001 | 3 | 144.4 | 145.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R1925 | RFLP | Oryza sativa | qtl_marker |
To | G1318 | RFLP | Oryza sativa | qtl_marker |
To | R273 | RFLP | Oryza sativa | qtl_marker |
To | RM148 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000205) | Tan-G-X et al., 2003 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007252) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tan-G-X et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 35,439,314 | 35,710,936 | ~160K SNPs x 20 accessions (McNally 2... | 211 | Search for SNPs |
chr3 | 35,439,314 | 35,710,936 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
chr3 | 35,439,314 | 35,710,936 | Huang X, et al, Nat Genetics 2010 Nov... | 544 | Search for SNPs |
chr3 | 35,439,314 | 35,710,936 | RiceDiversity 44K SNP assay, 34 trait... | 544 | Search for SNPs |
chr3 | 35,439,314 | 35,710,936 | RiceDiversity 44K SNP assay, 34 trait... | 38 | Search for SNPs |