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Oryza sativa QTL "AQEB012" (1000-seed weight)
| QTL Accession ID | AQEB012 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
| Trait Symbol | TSDWT | ||||||||||
| Trait Name | 1000-seed weight | ||||||||||
| Published Symbol | tgw6 | ||||||||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||||||||
| Chromosome | 6 | ||||||||||
| Comments | This QTL was detected using 1998 phenotypic data. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 3,923,089-27,729,235 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 6 | 82.9-107.3 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQEB012 | 6 | 82.9 | 107.3 |
Associated Markers (43)
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000382) | Ishimaru-K, 2003 (IAGP) |
| Plant Structure | (PO:0009010) | Ishimaru-K, 2003 (SM) |
| Plant Growth and Development Stage | (PO:0007038) | Ishimaru-K, 2003 (SM) |
| Growth Stage | (GRO:0007045) | Ishimaru-K, 2003 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Ishimaru-K, 2003 (SM) |
Database Cross-References (1)
SNPs (126,369)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 3,923,089 | 27,729,235 | ~160K SNPs x 20 accessions (McNally 2... | 12,655 | Search for SNPs |
| chr6 | 3,923,089 | 27,729,235 | '1536 chip' - 1311 SNPs x 395 rice ac... | 81 | Search for SNPs |
| chr6 | 3,923,089 | 27,729,235 | Huang X, et al, Nat Genetics 2010 Nov... | 55,628 | Search for SNPs |
| chr6 | 3,923,089 | 27,729,235 | RiceDiversity 44K SNP assay, 34 trait... | 55,628 | Search for SNPs |
| chr6 | 3,923,089 | 27,729,235 | RiceDiversity 44K SNP assay, 34 trait... | 2,377 | Search for SNPs |
