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Oryza sativa QTL "AQE046" (100-seed weight)
| QTL Accession ID | AQE046 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | HSDWT |
| Trait Name | 100-seed weight |
| Published Symbol | |
| Trait Synonym(s) | hundred seed weight |
| Trait Category | Yield |
| Chromosome | 11 |
| Comments | Related with yield and yield components. Genetic population is BC2F2 from cross of O. glumaepatula and O. sativa. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 932,068-9,001,898 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Brazil BG90-2/RS16 QTL 2002 | BNL6.32 | 11 | 0-40.2 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQE046 | 11 | 0 | 40.2 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM20 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM4 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM167 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM202 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM209 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000269) | Brondani-C et al., 2002 (IAGP) |
| Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Brondani-C et al., 2002 (SM) |
Database Cross-References (1)
SNPs (47,135)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr11 | 932,068 | 9,001,898 | ~160K SNPs x 20 accessions (McNally 2... | 3,195 | Search for SNPs |
| chr11 | 932,068 | 9,001,898 | '1536 chip' - 1311 SNPs x 395 rice ac... | 28 | Search for SNPs |
| chr11 | 932,068 | 9,001,898 | Huang X, et al, Nat Genetics 2010 Nov... | 21,608 | Search for SNPs |
| chr11 | 932,068 | 9,001,898 | RiceDiversity 44K SNP assay, 34 trait... | 21,608 | Search for SNPs |
| chr11 | 932,068 | 9,001,898 | RiceDiversity 44K SNP assay, 34 trait... | 696 | Search for SNPs |
