QTL Accession ID | AQDZ013 | ||||
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Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | LOI | ||||
Trait Name | lodging incidence | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Abiotic stress | ||||
Chromosome | 5 | ||||
Comments | Lodging resistance to typhoon was measured to evaluate lodging resistance and used for QTL analysis. QTLs for the trait were analyzed with 98 NILs in 2002. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 21,372,057-27,977,104 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 5 | 87.4-115.4 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
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AQDZ013 | 5 | 87.4 | 115.4 |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000068) | Kashiwagi-T et al., 2004 (IAGP) |
Plant Structure | (PO:0009047) | Kashiwagi-T et al., 2004 (SM) |
(PO:0009025) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007038) | Kashiwagi-T et al., 2004 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Kashiwagi-T et al., 2004 (SM) |
(GRO:0007140) | Kashiwagi-T et al., 2004 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Kashiwagi-T et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 21,372,057 | 27,977,104 | ~160K SNPs x 20 accessions (McNally 2... | 4,687 | Search for SNPs |
chr5 | 21,372,057 | 27,977,104 | '1536 chip' - 1311 SNPs x 395 rice ac... | 24 | Search for SNPs |
chr5 | 21,372,057 | 27,977,104 | Huang X, et al, Nat Genetics 2010 Nov... | 7,252 | Search for SNPs |
chr5 | 21,372,057 | 27,977,104 | RiceDiversity 44K SNP assay, 34 trait... | 7,252 | Search for SNPs |
chr5 | 21,372,057 | 27,977,104 | RiceDiversity 44K SNP assay, 34 trait... | 760 | Search for SNPs |