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Oryza sativa QTL "AQDZ008" (culm thickness)
| QTL Accession ID | AQDZ008 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | CULMTH | ||||||
| Trait Name | culm thickness | ||||||
| Published Symbol | |||||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||||
| Chromosome | 6 | ||||||
| Comments | QTLs for the trait were analyzed with 98 NILs in 2001. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 3,923,089-27,729,235 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 6 | 91.9-107.3 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDZ008 | 6 | 91.9 | 107.3 |
Associated Markers (33)
Associated Genes (0)
Associated Ontologies (9)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000339) | Kashiwagi-T et al., 2004 (IAGP) |
| Plant Structure | (PO:0009047) | Kashiwagi-T et al., 2004 (SM) |
| Plant Growth and Development Stage | (PO:0007038) | Kashiwagi-T et al., 2004 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Kashiwagi-T et al., 2004 (SM) |
| (GRO:0007140) | Kashiwagi-T et al., 2004 (SM) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Kashiwagi-T et al., 2004 (SM) |
Database Cross-References (1)
SNPs (126,369)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 3,923,089 | 27,729,235 | ~160K SNPs x 20 accessions (McNally 2... | 12,655 | Search for SNPs |
| chr6 | 3,923,089 | 27,729,235 | '1536 chip' - 1311 SNPs x 395 rice ac... | 81 | Search for SNPs |
| chr6 | 3,923,089 | 27,729,235 | Huang X, et al, Nat Genetics 2010 Nov... | 55,628 | Search for SNPs |
| chr6 | 3,923,089 | 27,729,235 | RiceDiversity 44K SNP assay, 34 trait... | 55,628 | Search for SNPs |
| chr6 | 3,923,089 | 27,729,235 | RiceDiversity 44K SNP assay, 34 trait... | 2,377 | Search for SNPs |
