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Oryza sativa QTL "AQDZ005" (lodging incidence)
| QTL Accession ID | AQDZ005 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | LOI | ||||
| Trait Name | lodging incidence | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Abiotic stress | ||||
| Chromosome | 12 | ||||
| Comments | Pushing resistance of the lower part of rice was measured to evaluate lodging resistance and used for QTL analysis. QTLs for the trait were analyzed with 98 NILs in 2001. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 3,885,926-27,489,485 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 12 | 97.3-109.5 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDZ005 | 12 | 97.3 | 109.5 |
Associated Markers (40)
Associated Genes (0)
Associated Ontologies (10)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000068) | Kashiwagi-T et al., 2004 (IAGP) |
| Plant Structure | (PO:0009047) | Kashiwagi-T et al., 2004 (SM) |
| (PO:0009025) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007038) | Kashiwagi-T et al., 2004 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Kashiwagi-T et al., 2004 (SM) |
| (GRO:0007140) | Kashiwagi-T et al., 2004 (SM) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Kashiwagi-T et al., 2004 (SM) |
Database Cross-References (1)
SNPs (127,082)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr12 | 3,885,926 | 27,489,485 | ~160K SNPs x 20 accessions (McNally 2... | 8,285 | Search for SNPs |
| chr12 | 3,885,926 | 27,489,485 | '1536 chip' - 1311 SNPs x 395 rice ac... | 88 | Search for SNPs |
| chr12 | 3,885,926 | 27,489,485 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 633 | Search for SNPs |
| chr12 | 3,885,926 | 27,489,485 | Huang X, et al, Nat Genetics 2010 Nov... | 58,108 | Search for SNPs |
| chr12 | 3,885,926 | 27,489,485 | RiceDiversity 44K SNP assay, 34 trait... | 58,108 | Search for SNPs |
| chr12 | 3,885,926 | 27,489,485 | RiceDiversity 44K SNP assay, 34 trait... | 1,860 | Search for SNPs |
