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Oryza sativa QTL "AQDY140" (culm length)
| QTL Accession ID | AQDY140 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | CULMLG |
| Trait Name | culm length |
| Published Symbol | |
| Trait Synonym(s) |
CL cml |
| Trait Category | Anatomy |
| Chromosome | 12 |
| Comments | The phenotypic experiment was conducted under irrigated field conditions during May-Oct in 1996 (96 J) at the former Hokuriku National Agricultural Experiment Station, Japan. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 4,102,373-25,047,471 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Mil23/Aki RI QTL 2003 | BNL6.32 | 12 | 18-79.4 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDY140 | 12 | 18 | 79.4 |
Associated Markers (7)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | G124 | RFLP | Oryza sativa | qtl_marker |
| To | XNpb304 | RFLP | Oryza sativa | qtl_marker |
| To | G2140 | RFLP | Oryza sativa | qtl_marker |
| To | XNpb307 | RFLP | Oryza sativa | qtl_marker |
| To | C1069 | RFLP | Oryza sativa | qtl_marker |
| To | G338 | RFLP | Oryza sativa | qtl_marker |
| To | G148 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000576) | Kobayashi-S et al., 2003 (IAGP) |
| Plant Structure | (PO:0009047) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Kobayashi-S et al., 2003 (SM) |
Database Cross-References (1)
SNPs (114,579)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr12 | 4,102,373 | 25,047,471 | ~160K SNPs x 20 accessions (McNally 2... | 7,021 | Search for SNPs |
| chr12 | 4,102,373 | 25,047,471 | '1536 chip' - 1311 SNPs x 395 rice ac... | 74 | Search for SNPs |
| chr12 | 4,102,373 | 25,047,471 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 633 | Search for SNPs |
| chr12 | 4,102,373 | 25,047,471 | Huang X, et al, Nat Genetics 2010 Nov... | 52,619 | Search for SNPs |
| chr12 | 4,102,373 | 25,047,471 | RiceDiversity 44K SNP assay, 34 trait... | 52,619 | Search for SNPs |
| chr12 | 4,102,373 | 25,047,471 | RiceDiversity 44K SNP assay, 34 trait... | 1,613 | Search for SNPs |
