QTL Accession ID | AQDY051 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CULMLG |
Trait Name | culm length |
Published Symbol | |
Trait Synonym(s) |
CL cml |
Trait Category | Anatomy |
Chromosome | 3 |
Comments | The phenotypic experiment was conducted under irrigated field conditions during the 2001 dry season (Jan-Apr, 01DS) at the International Rice Research Institute, Los Banos, Philippines. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 14,291,043-25,119,024 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Mil23/Aki RI QTL 2003 | BNL6.32 | 3 | 34.4-61.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDY051 | 3 | 34.4 | 61.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R2170 | RFLP | Oryza sativa | qtl_marker |
To | Y3870L | RFLP | Oryza sativa | qtl_marker |
To | G144 | RFLP | Oryza sativa | qtl_marker |
To | XNpb79 | RFLP | Oryza sativa | qtl_marker |
To | R250 | RFLP | Oryza sativa | qtl_marker |
To | C198 | RFLP | Oryza sativa | qtl_marker |
To | C136 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000576) | Kobayashi-S et al., 2003 (IAGP) |
Plant Structure | (PO:0009047) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Kobayashi-S et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 14,291,043 | 25,119,024 | ~160K SNPs x 20 accessions (McNally 2... | 3,727 | Search for SNPs |
chr3 | 14,291,043 | 25,119,024 | '1536 chip' - 1311 SNPs x 395 rice ac... | 25 | Search for SNPs |
chr3 | 14,291,043 | 25,119,024 | Huang X, et al, Nat Genetics 2010 Nov... | 26,114 | Search for SNPs |
chr3 | 14,291,043 | 25,119,024 | RiceDiversity 44K SNP assay, 34 trait... | 26,114 | Search for SNPs |
chr3 | 14,291,043 | 25,119,024 | RiceDiversity 44K SNP assay, 34 trait... | 938 | Search for SNPs |