QTL Accession ID | AQDY044 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TINB | ||||||||||
Trait Name | tiller number | ||||||||||
Published Symbol | |||||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||||
Chromosome | 2 | ||||||||||
Comments | The phenotypic experiment was conducted under irrigated field conditions during the 2001 dry season (Jan-Apr, 01DS) at the International Rice Research Institute, Los Banos, Philippines. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 34,935,520-34,935,720 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Mil23/Aki RI QTL 2003 | BNL6.32 | 2 | 116.2-122 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDY044 | 2 | 116.2 | 122 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G1234 | RFLP | Oryza sativa | qtl_marker |
To | G317 | RFLP | Oryza sativa | qtl_marker |
To | XNpb298 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000346) | Kobayashi-S et al., 2003 (IAGP) |
Plant Structure | (PO:0005001) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007073) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007049) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Kobayashi-S et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 34,935,520 | 34,935,720 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr2 | 34,935,520 | 34,935,720 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr2 | 34,935,520 | 34,935,720 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr2 | 34,935,520 | 34,935,720 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr2 | 34,935,520 | 34,935,720 | RiceDiversity 44K SNP assay, 34 trait... | 0 |