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Oryza sativa QTL "AQDY013" (tiller number)
| QTL Accession ID | AQDY013 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
| Trait Symbol | TINB | ||||||||||
| Trait Name | tiller number | ||||||||||
| Published Symbol | |||||||||||
| Trait Synonym(s) |
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| Trait Category | Vigor | ||||||||||
| Chromosome | 1 | ||||||||||
| Comments | The phenotypic experiment was conducted under irrigated field conditions during the 2001 dry season (Jan-Apr, 01DS) at the International Rice Research Institute, Los Banos, Philippines. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 4,753,787-10,491,821 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Mil23/Aki RI QTL 2003 | BNL6.32 | 1 | 16.4-27.8 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDY013 | 1 | 16.4 | 27.8 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R210 | RFLP | Oryza sativa | qtl_marker |
| To | G359 | RFLP | Oryza sativa | qtl_marker |
| To | G107 | RFLP | Oryza sativa | qtl_marker |
| To | XNpb90 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000346) | Kobayashi-S et al., 2003 (IAGP) |
| Plant Structure | (PO:0005001) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007073) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007049) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Kobayashi-S et al., 2003 (SM) |
Database Cross-References (1)
SNPs (28,259)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 4,753,787 | 10,491,821 | ~160K SNPs x 20 accessions (McNally 2... | 3,638 | Search for SNPs |
| chr1 | 4,753,787 | 10,491,821 | '1536 chip' - 1311 SNPs x 395 rice ac... | 22 | Search for SNPs |
| chr1 | 4,753,787 | 10,491,821 | Huang X, et al, Nat Genetics 2010 Nov... | 11,734 | Search for SNPs |
| chr1 | 4,753,787 | 10,491,821 | RiceDiversity 44K SNP assay, 34 trait... | 11,734 | Search for SNPs |
| chr1 | 4,753,787 | 10,491,821 | RiceDiversity 44K SNP assay, 34 trait... | 1,131 | Search for SNPs |
