QTL Accession ID | AQDX002 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | OSADJCAP | ||||
Trait Name | osmotic adjustment capacity | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Abiotic stress | ||||
Chromosome | 1 | ||||
Comments | Osmotic adjustment was measured to evaluate drought tolerance in rice and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 5,094,276-7,445,919 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR622/IR600 QTL 2003 | BNL6.32 | 1 | 91-119.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDX002 | 1 | 91 | 119.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM101 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RG400 | RFLP | Oryza sativa | qtl_marker |
To | RG140 | RFLP | Oryza sativa | qtl_marker |
To | RG532 | RFLP | Oryza sativa | qtl_marker |
To | RM259 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM1 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM243 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000507) | Robin-S et al., 2003 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Robin-S et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 5,094,276 | 7,445,919 | ~160K SNPs x 20 accessions (McNally 2... | 1,720 | Search for SNPs |
chr1 | 5,094,276 | 7,445,919 | '1536 chip' - 1311 SNPs x 395 rice ac... | 15 | Search for SNPs |
chr1 | 5,094,276 | 7,445,919 | Huang X, et al, Nat Genetics 2010 Nov... | 7,564 | Search for SNPs |
chr1 | 5,094,276 | 7,445,919 | RiceDiversity 44K SNP assay, 34 trait... | 7,564 | Search for SNPs |
chr1 | 5,094,276 | 7,445,919 | RiceDiversity 44K SNP assay, 34 trait... | 729 | Search for SNPs |