![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
QTL Home |
Simple Search |
Power Search |
Help |
Tutorial |
FAQ
Oryza sativa QTL "AQDW001" (days to heading)
| QTL Accession ID | AQDW001 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | DTHD | ||||
| Trait Name | days to heading | ||||
| Published Symbol | Hd8 | ||||
| Trait Synonym(s) |
|
||||
| Trait Category | Development | ||||
| Chromosome | 3 | ||||
| Comments | The position of this QTL was fine mapped with an advanced backcross progeny. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 9,848,330-10,322,897 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 3 | 44.4-46.6 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDW001 | 3 | 44.4 | 46.6 |
Associated Markers (11)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C12534S | RFLP | Oryza sativa | qtl_marker |
| To | C1488 | RFLP | Oryza sativa | qtl_marker |
| To | C2045 | RFLP | Oryza sativa | qtl_marker |
| To | R2849 | RFLP | Oryza sativa | qtl_marker |
| To | C614 | RFLP | Oryza sativa | qtl_marker |
| To | S1650 | RFLP | Oryza sativa | qtl_marker |
| To | R134 | RFLP | Oryza sativa | qtl_marker |
| To | R3031S | RFLP | Oryza sativa | qtl_marker |
| To | C2184 | RFLP | Oryza sativa | qtl_marker |
| To | R1690 | RFLP | Oryza sativa | qtl_marker |
| To | C606 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000137) | Takeuchi-Y et al., 2003 (IAGP) |
| Plant Structure | (PO:0009049) | Takeuchi-Y et al., 2003 (SM) |
| Plant Growth and Development Stage | (PO:0007130) | Takeuchi-Y et al., 2003 (SM) |
| Growth Stage | (GRO:0007044) | Takeuchi-Y et al., 2003 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Takeuchi-Y et al., 2003 (SM) |
Database Cross-References (1)
SNPs (1,893)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 9,848,330 | 10,322,897 | ~160K SNPs x 20 accessions (McNally 2... | 195 | Search for SNPs |
| chr3 | 9,848,330 | 10,322,897 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
| chr3 | 9,848,330 | 10,322,897 | Huang X, et al, Nat Genetics 2010 Nov... | 822 | Search for SNPs |
| chr3 | 9,848,330 | 10,322,897 | RiceDiversity 44K SNP assay, 34 trait... | 822 | Search for SNPs |
| chr3 | 9,848,330 | 10,322,897 | RiceDiversity 44K SNP assay, 34 trait... | 52 | Search for SNPs |
