QTL Accession ID | AQDU015 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | COLDTL |
Trait Name | cold tolerance |
Published Symbol | qCTS4-3 |
Trait Synonym(s) |
ctol low temperature resistance |
Trait Category | Abiotic stress |
Chromosome | 4 |
Comments | Cold-induced yellowing tolerance (CIYT) taken from 60-day-old plants screened at 12 C constant day/night temperature regime for 5 days was applied to evaluate the cold tolerance and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 26,857,374-29,061,127 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | M202/IR50 UCD QTL 2003 | BNL6.32 | 4 | 67.4-82.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDU015 | 4 | 67.4 | 82.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM241 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM317 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM226 | SSR | Oryza sativa | qtl_marker |
To | RM255 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000303) | Kashiwagi-T et al., 2004 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007174) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Kashiwagi-T et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 26,857,374 | 29,061,127 | ~160K SNPs x 20 accessions (McNally 2... | 898 | Search for SNPs |
chr4 | 26,857,374 | 29,061,127 | '1536 chip' - 1311 SNPs x 395 rice ac... | 6 | Search for SNPs |
chr4 | 26,857,374 | 29,061,127 | Huang X, et al, Nat Genetics 2010 Nov... | 3,923 | Search for SNPs |
chr4 | 26,857,374 | 29,061,127 | RiceDiversity 44K SNP assay, 34 trait... | 3,923 | Search for SNPs |
chr4 | 26,857,374 | 29,061,127 | RiceDiversity 44K SNP assay, 34 trait... | 188 | Search for SNPs |