QTL Accession ID | AQDU009 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | COLDTL |
Trait Name | cold tolerance |
Published Symbol | qCTS6-1 |
Trait Synonym(s) |
ctol low temperature resistance |
Trait Category | Abiotic stress |
Chromosome | 6 |
Comments | Cold tolerance (CT) taken from seedlings screened at 15/9 C day/night temperature regime for 14 days was applied to evaluate the cold tolerance and used for QTL analysis. Cold tolerance scoring was based on the Standard Evaluation Systems in rice proposed by IRRI. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 5,425,408-5,425,631 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | M202/IR50 UCD QTL 2003 | BNL6.32 | 6 | 24.8-28.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDU009 | 6 | 24.8 | 28.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM253 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM50 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM314 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM173 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000303) | Kashiwagi-T et al., 2004 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007174) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Kashiwagi-T et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 5,425,408 | 5,425,631 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr6 | 5,425,408 | 5,425,631 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 5,425,408 | 5,425,631 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr6 | 5,425,408 | 5,425,631 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr6 | 5,425,408 | 5,425,631 | RiceDiversity 44K SNP assay, 34 trait... | 0 |