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Oryza sativa QTL "AQDQ050" (seed weight)
| QTL Accession ID | AQDQ050 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | SDWT | ||||||
| Trait Name | seed weight | ||||||
| Published Symbol | tgwt5b | ||||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||||
| Chromosome | 5 | ||||||
| Comments | This QTL was detected using phenotypic data of F3 lines at the International Rice Research Institute (IRRI). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 18,874,932-24,262,670 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNRRI Tes/CB QTL 1997 | BNL6.32 | 5 | 89.6-122.9 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDQ050 | 5 | 89.6 | 122.9 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG13 | RFLP | Oryza sativa | qtl_marker |
| To | RG573 | RFLP | Oryza sativa | qtl_marker |
| To | RZ70 | RFLP | Oryza sativa | qtl_marker |
| To | RG182 | RFLP | Oryza sativa | qtl_marker |
| To | RG470 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000181) | Zhuang-J-Y et al., 1997 (IAGP) |
| Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Zhuang-J-Y et al., 1997 (SM) |
Database Cross-References (1)
SNPs (23,135)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr5 | 18,874,932 | 24,262,670 | ~160K SNPs x 20 accessions (McNally 2... | 3,501 | Search for SNPs |
| chr5 | 18,874,932 | 24,262,670 | '1536 chip' - 1311 SNPs x 395 rice ac... | 18 | Search for SNPs |
| chr5 | 18,874,932 | 24,262,670 | Huang X, et al, Nat Genetics 2010 Nov... | 9,500 | Search for SNPs |
| chr5 | 18,874,932 | 24,262,670 | RiceDiversity 44K SNP assay, 34 trait... | 9,500 | Search for SNPs |
| chr5 | 18,874,932 | 24,262,670 | RiceDiversity 44K SNP assay, 34 trait... | 616 | Search for SNPs |
