QTL Accession ID | AQDP005 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | FESN |
Trait Name | iron sensitivity |
Published Symbol | |
Trait Synonym(s) | iron toxicity |
Trait Category | Abiotic stress |
Chromosome | 8 |
Comments | Relative decrease of shoot dry weight (RDSDW, [SDW measured under normal culture - SDW measured under Fe2+ stress] x 100% / SDW measured under normal culture) was measured to evaluate iron sensitivity and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 17,437,513-21,647,445 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 8 | 27.6-53.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDP005 | 8 | 27.6 | 53.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG978 | RFLP | Oryza sativa | qtl_marker |
To | RG1 | RFLP | Oryza sativa | qtl_marker |
To | RZ617 | RFLP | Oryza sativa | qtl_marker |
To | S1AS1I2 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000224) | Wu-P et al., 1997 (IAGP) |
Plant Structure | (PO:0009006) | Wu-P et al., 1997 (SM) |
(PO:0000003) | Gramene curators, 2007 (IC) | |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007134) | Wu-P et al., 1997 (SM) |
(PO:0007033) | Gramene curators, 2007 (IC) | |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Wu-P et al., 1997 (SM) |
(GRO:0007001) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007242) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Wu-P et al., 1997 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 17,437,513 | 21,647,445 | ~160K SNPs x 20 accessions (McNally 2... | 1,463 | Search for SNPs |
chr8 | 17,437,513 | 21,647,445 | '1536 chip' - 1311 SNPs x 395 rice ac... | 13 | Search for SNPs |
chr8 | 17,437,513 | 21,647,445 | Huang X, et al, Nat Genetics 2010 Nov... | 13,304 | Search for SNPs |
chr8 | 17,437,513 | 21,647,445 | RiceDiversity 44K SNP assay, 34 trait... | 13,304 | Search for SNPs |
chr8 | 17,437,513 | 21,647,445 | RiceDiversity 44K SNP assay, 34 trait... | 409 | Search for SNPs |