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Oryza sativa QTL "AQDP004" (iron sensitivity)
| QTL Accession ID | AQDP004 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | FESN |
| Trait Name | iron sensitivity |
| Published Symbol | |
| Trait Synonym(s) | iron toxicity |
| Trait Category | Abiotic stress |
| Chromosome | 1 |
| Comments | Relative decrease of shoot dry weight (RDSDW, [SDW measured under normal culture - SDW measured under Fe2+ stress] x 100% / SDW measured under normal culture) was measured to evaluate iron sensitivity and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 40,700,034-41,541,798 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 1 | 151.3-157.4 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDP004 | 1 | 151.3 | 157.4 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG810 | RFLP | Oryza sativa | qtl_marker |
| To | RG331 | RFLP | Oryza sativa | qtl_marker |
| To | RZ801 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (11)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000224) | Wu-P et al., 1997 (IAGP) |
| Plant Structure | (PO:0009006) | Wu-P et al., 1997 (SM) |
| (PO:0000003) | Gramene curators, 2007 (IC) | |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007134) | Wu-P et al., 1997 (SM) |
| (PO:0007033) | Gramene curators, 2007 (IC) | |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Wu-P et al., 1997 (SM) |
| (GRO:0007001) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007242) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Wu-P et al., 1997 (SM) |
Database Cross-References (1)
SNPs (4,264)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 40,700,034 | 41,541,798 | ~160K SNPs x 20 accessions (McNally 2... | 773 | Search for SNPs |
| chr1 | 40,700,034 | 41,541,798 | '1536 chip' - 1311 SNPs x 395 rice ac... | 3 | Search for SNPs |
| chr1 | 40,700,034 | 41,541,798 | Huang X, et al, Nat Genetics 2010 Nov... | 1,666 | Search for SNPs |
| chr1 | 40,700,034 | 41,541,798 | RiceDiversity 44K SNP assay, 34 trait... | 1,666 | Search for SNPs |
| chr1 | 40,700,034 | 41,541,798 | RiceDiversity 44K SNP assay, 34 trait... | 156 | Search for SNPs |
