QTL Accession ID | AQDN005 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | Hd-5 | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 8 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 4,686,224-5,649,834 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 8 | 36.8-40.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDN005 | 8 | 36.8 | 40.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R902 | RFLP | Oryza sativa | qtl_marker |
To | S2108 | RFLP | Oryza sativa | qtl_marker |
To | S1850 | RFLP | Oryza sativa | qtl_marker |
To | S1633 | RFLP | Oryza sativa | qtl_marker |
To | S1461 | RFLP | Oryza sativa | qtl_marker |
To | S2092 | RFLP | Oryza sativa | qtl_marker |
To | E10532 | RFLP | Oryza sativa | qtl_marker |
To | C1121 | RFLP | Oryza sativa | qtl_marker |
To | R2736 | RFLP | Oryza sativa | qtl_marker |
To | R544 | RFLP | Oryza sativa | qtl_marker |
To | V149 | RFLP | Oryza sativa | qtl_marker |
To | E1133S | RFLP | Oryza sativa | qtl_marker |
To | PSR154 | RFLP | Triticum aestivum | qtl_marker |
To | V192 | RFLP | Oryza sativa | qtl_marker |
To | S12665S | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Yano-M et al., 1997 (IAGP) |
Plant Structure | (PO:0009049) | Yano-M et al., 1997 (SM) |
Plant Growth and Development Stage | (PO:0007130) | Yano-M et al., 1997 (SM) |
Growth Stage | (GRO:0007044) | Yano-M et al., 1997 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yano-M et al., 1997 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 4,686,224 | 5,649,834 | ~160K SNPs x 20 accessions (McNally 2... | 395 | Search for SNPs |
chr8 | 4,686,224 | 5,649,834 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
chr8 | 4,686,224 | 5,649,834 | Huang X, et al, Nat Genetics 2010 Nov... | 1,636 | Search for SNPs |
chr8 | 4,686,224 | 5,649,834 | RiceDiversity 44K SNP assay, 34 trait... | 1,636 | Search for SNPs |
chr8 | 4,686,224 | 5,649,834 | RiceDiversity 44K SNP assay, 34 trait... | 102 | Search for SNPs |