QTL Accession ID | AQDN002 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | Hd-2 | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 7 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 29,489,075-29,661,429 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 7 | 118.6-118.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDN002 | 7 | 118.6 | 118.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | S1979 | RFLP | Oryza sativa | qtl_marker |
To | E933S | RFLP | Oryza sativa | qtl_marker |
To | E3029S | RFLP | Oryza sativa | qtl_marker |
To | E50187S | RFLP | Oryza sativa | qtl_marker |
To | S1205S | RFLP | Oryza sativa | qtl_marker |
To | C213 | RFLP | Oryza sativa | qtl_marker |
To | C728 | RFLP | Oryza sativa | qtl_marker |
To | RG351 | RFLP | Oryza sativa | qtl_marker |
To | R411 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Yano-M et al., 1997 (IAGP) |
Plant Structure | (PO:0009049) | Yano-M et al., 1997 (SM) |
Plant Growth and Development Stage | (PO:0007130) | Yano-M et al., 1997 (SM) |
Growth Stage | (GRO:0007044) | Yano-M et al., 1997 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yano-M et al., 1997 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 29,489,075 | 29,661,429 | ~160K SNPs x 20 accessions (McNally 2... | 72 | Search for SNPs |
chr7 | 29,489,075 | 29,661,429 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr7 | 29,489,075 | 29,661,429 | Huang X, et al, Nat Genetics 2010 Nov... | 354 | Search for SNPs |
chr7 | 29,489,075 | 29,661,429 | RiceDiversity 44K SNP assay, 34 trait... | 354 | Search for SNPs |
chr7 | 29,489,075 | 29,661,429 | RiceDiversity 44K SNP assay, 34 trait... | 15 | Search for SNPs |