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Oryza sativa QTL "AQDM003" (spikelet sterility)
| QTL Accession ID | AQDM003 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | SPKST |
| Trait Name | spikelet sterility |
| Published Symbol | Ste3 |
| Trait Synonym(s) |
PSS percent spikelet sterility |
| Trait Category | Sterility or fertility |
| Chromosome | 1 |
| Comments | Low-temperature-sensitive sterility in indica-japonica hybrids of rice was measured and used for QTL analysis. This QTL was detected from the BC1F1 population of 3037/02428//3037. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 41,967,890-43,046,407 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU 3037/2428 BC1F1QTL 1997 | BNL6.32 | 1 | 0-6.1 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDM003 | 1 | 0 | 6.1 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ566 | RFLP | Oryza sativa | qtl_marker |
| To | RG236 | RFLP | Oryza sativa | qtl_marker |
| To | C225 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000436) | Li-H-B et al., 1997 (IAGP) |
| Plant Structure | (PO:0009051) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Li-H-B et al., 1997 (SM) |
Database Cross-References (1)
SNPs (6,674)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 41,967,890 | 43,046,407 | ~160K SNPs x 20 accessions (McNally 2... | 1,269 | Search for SNPs |
| chr1 | 41,967,890 | 43,046,407 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
| chr1 | 41,967,890 | 43,046,407 | Huang X, et al, Nat Genetics 2010 Nov... | 2,260 | Search for SNPs |
| chr1 | 41,967,890 | 43,046,407 | RiceDiversity 44K SNP assay, 34 trait... | 2,260 | Search for SNPs |
| chr1 | 41,967,890 | 43,046,407 | RiceDiversity 44K SNP assay, 34 trait... | 878 | Search for SNPs |
