QTL Accession ID | AQDM002 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SPKST |
Trait Name | spikelet sterility |
Published Symbol | Ste2 |
Trait Synonym(s) |
PSS percent spikelet sterility |
Trait Category | Sterility or fertility |
Chromosome | 12 |
Comments | Low-temperature-sensitive sterility in indica-japonica hybrids of rice was measured and used for QTL analysis. This QTL was detected from the BC1F1 population of 3037/02428//3037. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 876,277-1,005,506 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU 3037/2428 BC1F1QTL 1997 | BNL6.32 | 12 | 43.8-43.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDM002 | 12 | 43.8 | 43.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C362 | RFLP | Oryza sativa | qtl_marker |
To | C732 | RFLP | Oryza sativa | qtl_marker |
To | C104 | RFLP | Oryza sativa | qtl_marker |
To | G1112 | RFLP | Oryza sativa | qtl_marker |
To | RG98 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000436) | Li-H-B et al., 1997 (IAGP) |
Plant Structure | (PO:0009051) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Li-H-B et al., 1997 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 876,277 | 1,005,506 | ~160K SNPs x 20 accessions (McNally 2... | 70 | Search for SNPs |
chr12 | 876,277 | 1,005,506 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr12 | 876,277 | 1,005,506 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 876,277 | 1,005,506 | Huang X, et al, Nat Genetics 2010 Nov... | 466 | Search for SNPs |
chr12 | 876,277 | 1,005,506 | RiceDiversity 44K SNP assay, 34 trait... | 466 | Search for SNPs |
chr12 | 876,277 | 1,005,506 | RiceDiversity 44K SNP assay, 34 trait... | 9 | Search for SNPs |