QTL Accession ID | AQDL005 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | STOCSRTM |
Trait Name | stomatal closure time |
Published Symbol | |
Trait Synonym(s) |
TFSC time of fastest stomatal closure |
Trait Category | Abiotic stress |
Chromosome | 3 |
Comments | Time of fastest stomatal closure after leaf excision was measured to evaluate stomatal closure time and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 5,729,669-25,128,864 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | UKUW Bala/Azu QTL 1997 | BNL6.32 | 3 | 33.3-145.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDL005 | 3 | 33.3 | 145.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG191 | RFLP | Oryza sativa | qtl_marker |
To | RG745 | RFLP | Oryza sativa | qtl_marker |
To | G144 | RFLP | Oryza sativa | qtl_marker |
To | Y1049L | RFLP | Oryza sativa | qtl_marker |
To | RZ474 | RFLP | Oryza sativa | qtl_marker |
To | RG409 | RFLP | Oryza sativa | qtl_marker |
To | C746 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000521) | Price-A-H et al., 1997 (IAGP) |
Plant Structure | (PO:0002000) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Price-A-H et al., 1997 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 5,729,669 | 25,128,864 | ~160K SNPs x 20 accessions (McNally 2... | 7,539 | Search for SNPs |
chr3 | 5,729,669 | 25,128,864 | '1536 chip' - 1311 SNPs x 395 rice ac... | 58 | Search for SNPs |
chr3 | 5,729,669 | 25,128,864 | Huang X, et al, Nat Genetics 2010 Nov... | 41,833 | Search for SNPs |
chr3 | 5,729,669 | 25,128,864 | RiceDiversity 44K SNP assay, 34 trait... | 41,833 | Search for SNPs |
chr3 | 5,729,669 | 25,128,864 | RiceDiversity 44K SNP assay, 34 trait... | 1,875 | Search for SNPs |