QTL Accession ID | AQDL004 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | STOCSRRATE | ||||
Trait Name | stomatal closure rate | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Abiotic stress | ||||
Chromosome | 7 | ||||
Comments | Rate of stomatal closure upon excision was measured to evaluate stomatal closure rate and used for QTL analysis. Rate of stomatal closure upon excision was based on visual assessment of a plot of stomatal resistance vs. time. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 24,085,141-29,467,498 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | UKUW Bala/Azu QTL 1997 | BNL6.32 | 7 | 0-51.8 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQDL004 | 7 | 0 | 51.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG650 | RFLP | Oryza sativa | qtl_marker |
To | RG351 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000520) | Price-A-H et al., 1997 (IAGP) |
Plant Structure | (PO:0002000) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Price-A-H et al., 1997 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 24,085,141 | 29,467,498 | ~160K SNPs x 20 accessions (McNally 2... | 1,763 | Search for SNPs |
chr7 | 24,085,141 | 29,467,498 | '1536 chip' - 1311 SNPs x 395 rice ac... | 30 | Search for SNPs |
chr7 | 24,085,141 | 29,467,498 | Huang X, et al, Nat Genetics 2010 Nov... | 12,995 | Search for SNPs |
chr7 | 24,085,141 | 29,467,498 | RiceDiversity 44K SNP assay, 34 trait... | 12,995 | Search for SNPs |
chr7 | 24,085,141 | 29,467,498 | RiceDiversity 44K SNP assay, 34 trait... | 529 | Search for SNPs |