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Oryza sativa QTL "AQDL002" (stomatal resistance)
| QTL Accession ID | AQDL002 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | STORS |
| Trait Name | stomatal resistance |
| Published Symbol | |
| Trait Synonym(s) |
SR0 stomatal resistance before leaf excision |
| Trait Category | Abiotic stress |
| Chromosome | 3 |
| Comments | Stomatal resistance before leaf excision (SR0) was measured to evaluate stomatal resistance and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 3,495,798-12,147,908 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | UKUW Bala/Azu QTL 1997 | BNL6.32 | 3 | 0-87.6 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDL002 | 3 | 0 | 87.6 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C643 | RFLP | Oryza sativa | qtl_marker |
| To | RG409 | RFLP | Oryza sativa | qtl_marker |
| To | RG191 | RFLP | Oryza sativa | qtl_marker |
| To | RG745 | RFLP | Oryza sativa | qtl_marker |
| To | G144 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000523) | Price-A-H et al., 1997 (IAGP) |
| Plant Structure | (PO:0002000) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Price-A-H et al., 1997 (SM) |
Database Cross-References (1)
SNPs (34,620)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 3,495,798 | 12,147,908 | ~160K SNPs x 20 accessions (McNally 2... | 4,258 | Search for SNPs |
| chr3 | 3,495,798 | 12,147,908 | '1536 chip' - 1311 SNPs x 395 rice ac... | 30 | Search for SNPs |
| chr3 | 3,495,798 | 12,147,908 | Huang X, et al, Nat Genetics 2010 Nov... | 14,669 | Search for SNPs |
| chr3 | 3,495,798 | 12,147,908 | RiceDiversity 44K SNP assay, 34 trait... | 14,669 | Search for SNPs |
| chr3 | 3,495,798 | 12,147,908 | RiceDiversity 44K SNP assay, 34 trait... | 994 | Search for SNPs |
