QTL Accession ID | AQDK005 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | RAAB |
Trait Name | ratooning ability |
Published Symbol | Ra6b |
Trait Synonym(s) | |
Trait Category | Vigor |
Chromosome | 6 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 10,015,514-22,570,464 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 6 | 71.4-80 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDK005 | 6 | 71.4 | 80 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G294 | RFLP | Oryza sativa | qtl_marker |
To | RG264 | RFLP | Oryza sativa | qtl_marker |
To | CDO17 | RFLP | Avena sativa | qtl_marker |
To | G122 | RFLP | Oryza sativa | qtl_marker |
To | RG64 | RFLP | Oryza sativa | qtl_marker |
To | G1314 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000096) | Tan-Z-B et al., 1997 (IAGP) |
Plant Structure | (PO:0005001) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007073) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007049) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tan-Z-B et al., 1997 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 10,015,514 | 22,570,464 | ~160K SNPs x 20 accessions (McNally 2... | 5,323 | Search for SNPs |
chr6 | 10,015,514 | 22,570,464 | '1536 chip' - 1311 SNPs x 395 rice ac... | 33 | Search for SNPs |
chr6 | 10,015,514 | 22,570,464 | Huang X, et al, Nat Genetics 2010 Nov... | 28,443 | Search for SNPs |
chr6 | 10,015,514 | 22,570,464 | RiceDiversity 44K SNP assay, 34 trait... | 28,443 | Search for SNPs |
chr6 | 10,015,514 | 22,570,464 | RiceDiversity 44K SNP assay, 34 trait... | 1,058 | Search for SNPs |