QTL Accession ID | AQDK003 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | RAAB |
Trait Name | ratooning ability |
Published Symbol | Ra5a |
Trait Synonym(s) | |
Trait Category | Vigor |
Chromosome | 5 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 21,372,057-21,570,917 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 5 | 96.5-100.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDK003 | 5 | 96.5 | 100.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG573 | RFLP | Oryza sativa | qtl_marker |
To | C624 | RFLP | Oryza sativa | qtl_marker |
To | RG13 | RFLP | Oryza sativa | qtl_marker |
To | RG470 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000096) | Tan-Z-B et al., 1997 (IAGP) |
Plant Structure | (PO:0005001) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007073) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007049) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tan-Z-B et al., 1997 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 21,372,057 | 21,570,917 | ~160K SNPs x 20 accessions (McNally 2... | 122 | Search for SNPs |
chr5 | 21,372,057 | 21,570,917 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr5 | 21,372,057 | 21,570,917 | Huang X, et al, Nat Genetics 2010 Nov... | 528 | Search for SNPs |
chr5 | 21,372,057 | 21,570,917 | RiceDiversity 44K SNP assay, 34 trait... | 528 | Search for SNPs |
chr5 | 21,372,057 | 21,570,917 | RiceDiversity 44K SNP assay, 34 trait... | 21 | Search for SNPs |