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Oryza sativa QTL "AQDK002" (ratooning ability)
| QTL Accession ID | AQDK002 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | RAAB |
| Trait Name | ratooning ability |
| Published Symbol | Ra4a |
| Trait Synonym(s) | |
| Trait Category | Vigor |
| Chromosome | 4 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 19,540,955-19,544,854 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 4 | 113.5-126.6 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDK002 | 4 | 113.5 | 126.6 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C975 | RFLP | Oryza sativa | qtl_marker |
| To | RG449 | RFLP | Oryza sativa | qtl_marker |
| To | G271 | RFLP | Oryza sativa | qtl_marker |
| To | RG908 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000096) | Tan-Z-B et al., 1997 (IAGP) |
| Plant Structure | (PO:0005001) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007073) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007049) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Tan-Z-B et al., 1997 (SM) |
Database Cross-References (1)
SNPs (12)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr4 | 19,540,955 | 19,544,854 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr4 | 19,540,955 | 19,544,854 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr4 | 19,540,955 | 19,544,854 | Huang X, et al, Nat Genetics 2010 Nov... | 6 | Search for SNPs |
| chr4 | 19,540,955 | 19,544,854 | RiceDiversity 44K SNP assay, 34 trait... | 6 | Search for SNPs |
| chr4 | 19,540,955 | 19,544,854 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
