QTL Accession ID | AQDJ008 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | INLG |
Trait Name | internode length |
Published Symbol | Mn11a |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 11 |
Comments | Length of the first internode below the panicle was measured to evaluate internode length and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 6,686,166-9,001,898 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 11 | 98.7-118.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDJ008 | 11 | 98.7 | 118.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG211 | RFLP | Oryza sativa | qtl_marker |
To | RG167 | RFLP | Oryza sativa | qtl_marker |
To | RM202 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM201 | SSR | Oryza sativa Indica Group | qtl_marker |
To | G320 | RFLP | Oryza sativa | qtl_marker |
To | RM209 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG118 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000145) | Tan-Z-B et al., 1996 (IAGP) |
Plant Structure | (PO:0005005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tan-Z-B et al., 1996 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 6,686,166 | 9,001,898 | ~160K SNPs x 20 accessions (McNally 2... | 670 | Search for SNPs |
chr11 | 6,686,166 | 9,001,898 | '1536 chip' - 1311 SNPs x 395 rice ac... | 6 | Search for SNPs |
chr11 | 6,686,166 | 9,001,898 | Huang X, et al, Nat Genetics 2010 Nov... | 7,001 | Search for SNPs |
chr11 | 6,686,166 | 9,001,898 | RiceDiversity 44K SNP assay, 34 trait... | 7,001 | Search for SNPs |
chr11 | 6,686,166 | 9,001,898 | RiceDiversity 44K SNP assay, 34 trait... | 155 | Search for SNPs |