QTL Accession ID | AQDJ007 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | INLG |
Trait Name | internode length |
Published Symbol | Mn9a |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 9 |
Comments | Length of the first internode below the panicle was measured to evaluate internode length and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 17,719,660-18,810,331 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 9 | 96.7-101.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDJ007 | 9 | 96.7 | 101.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C356 | RFLP | Oryza sativa | qtl_marker |
To | RM257 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM242 | SSR | Oryza sativa Indica Group | qtl_marker |
To | G385 | RFLP | Oryza sativa | qtl_marker |
To | RM201 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000145) | Tan-Z-B et al., 1996 (IAGP) |
Plant Structure | (PO:0005005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tan-Z-B et al., 1996 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr9 | 17,719,660 | 18,810,331 | ~160K SNPs x 20 accessions (McNally 2... | 624 | Search for SNPs |
chr9 | 17,719,660 | 18,810,331 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
chr9 | 17,719,660 | 18,810,331 | Huang X, et al, Nat Genetics 2010 Nov... | 2,013 | Search for SNPs |
chr9 | 17,719,660 | 18,810,331 | RiceDiversity 44K SNP assay, 34 trait... | 2,013 | Search for SNPs |
chr9 | 17,719,660 | 18,810,331 | RiceDiversity 44K SNP assay, 34 trait... | 135 | Search for SNPs |