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Oryza sativa QTL "AQDI004" (hybrid incompatibilty)
| QTL Accession ID | AQDI004 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | HYBIC |
| Trait Name | hybrid incompatibilty |
| Published Symbol | std-3 |
| Trait Synonym(s) | |
| Trait Category | Sterility or fertility |
| Chromosome | 3 |
| Comments | This QTL was detected based on the data of the backcross population of DH x ZYQ8. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 5,438,334-8,410,886 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 3 | 42.8-52.3 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDI004 | 3 | 42.8 | 52.3 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG450 | RFLP | Oryza sativa | qtl_marker |
| To | RG266 | RFLP | Oryza sativa | qtl_marker |
| To | C63 | RFLP | Oryza sativa | qtl_marker |
| To | C74 | RFLP | Oryza sativa | qtl_marker |
| To | RG227 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000036) | Liu-Y-S et al., 1997 (IAGP) |
| Plant Structure | (PO:0009046) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Liu-Y-S et al., 1997 (SM) |
Database Cross-References (1)
SNPs (12,589)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 5,438,334 | 8,410,886 | ~160K SNPs x 20 accessions (McNally 2... | 1,212 | Search for SNPs |
| chr3 | 5,438,334 | 8,410,886 | '1536 chip' - 1311 SNPs x 395 rice ac... | 11 | Search for SNPs |
| chr3 | 5,438,334 | 8,410,886 | Huang X, et al, Nat Genetics 2010 Nov... | 5,520 | Search for SNPs |
| chr3 | 5,438,334 | 8,410,886 | RiceDiversity 44K SNP assay, 34 trait... | 5,520 | Search for SNPs |
| chr3 | 5,438,334 | 8,410,886 | RiceDiversity 44K SNP assay, 34 trait... | 326 | Search for SNPs |
