QTL Accession ID | AQDH009 | ||||||||
---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
Trait Symbol | SDWD | ||||||||
Trait Name | seed width | ||||||||
Published Symbol | |||||||||
Trait Synonym(s) |
|
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Trait Category | Quality | ||||||||
Chromosome | 11 | ||||||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 28,409,788-28,412,347 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 11 | 134.4-141.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDH009 | 11 | 134.4 | 141.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ536 | RFLP | Oryza sativa | qtl_marker |
To | r2 | RFLP | Oryza sativa | qtl_marker |
To | r3 | RFLP | Zea mays subsp. mays | qtl_marker |
To | r5 | RFLP | Oryza sativa | qtl_marker |
To | r10 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000149) | Huang-N et al., 1997 (IAGP) |
Plant Structure | (PO:0009010) | Huang-N et al., 1997 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Huang-N et al., 1997 (SM) |
Growth Stage | (GRO:0007045) | Huang-N et al., 1997 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Huang-N et al., 1997 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 28,409,788 | 28,412,347 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr11 | 28,409,788 | 28,412,347 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr11 | 28,409,788 | 28,412,347 | Huang X, et al, Nat Genetics 2010 Nov... | 13 | Search for SNPs |
chr11 | 28,409,788 | 28,412,347 | RiceDiversity 44K SNP assay, 34 trait... | 13 | Search for SNPs |
chr11 | 28,409,788 | 28,412,347 | RiceDiversity 44K SNP assay, 34 trait... | 0 |