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Oryza sativa QTL "AQDD005" (magnesium to potassium content ratio)
| QTL Accession ID | AQDD005 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | MGKCNRO |
| Trait Name | magnesium to potassium content ratio |
| Published Symbol | MgK1 |
| Trait Synonym(s) |
magnesium to potassium ratio ratio of magnesium to potassium |
| Trait Category | Quality |
| Chromosome | 7 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 24,622,352-24,623,729 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | KRGRP Mil23/Gih QTL 1998 | BNL6.32 | 7 | 135.9-139.9 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDD005 | 7 | 135.9 | 139.9 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ395 | RFLP | Oryza sativa | qtl_marker |
| To | RG156 | RFLP | Oryza sativa | qtl_marker |
| To | RM234 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM18 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000603) | Kang-H-J et al., 1998 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Kang-H-J et al., 1998 (SM) |
Database Cross-References (1)
SNPs (12)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr7 | 24,622,352 | 24,623,729 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr7 | 24,622,352 | 24,623,729 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr7 | 24,622,352 | 24,623,729 | Huang X, et al, Nat Genetics 2010 Nov... | 6 | Search for SNPs |
| chr7 | 24,622,352 | 24,623,729 | RiceDiversity 44K SNP assay, 34 trait... | 6 | Search for SNPs |
| chr7 | 24,622,352 | 24,623,729 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
