QTL Accession ID | AQDD001 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | AMYCN | ||||
Trait Name | amylose content | ||||
Published Symbol | AMY1 | ||||
Trait Synonym(s) |
|
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Trait Category | Quality | ||||
Chromosome | 7 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 24,622,352-24,623,729 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | KRGRP Mil23/Gih QTL 1998 | BNL6.32 | 7 | 135.9-139.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDD001 | 7 | 135.9 | 139.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ395 | RFLP | Oryza sativa | qtl_marker |
To | RG156 | RFLP | Oryza sativa | qtl_marker |
To | RM234 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM18 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000196) | Kang-H-J et al., 1998 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Kang-H-J et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 24,622,352 | 24,623,729 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr7 | 24,622,352 | 24,623,729 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr7 | 24,622,352 | 24,623,729 | Huang X, et al, Nat Genetics 2010 Nov... | 6 | Search for SNPs |
chr7 | 24,622,352 | 24,623,729 | RiceDiversity 44K SNP assay, 34 trait... | 6 | Search for SNPs |
chr7 | 24,622,352 | 24,623,729 | RiceDiversity 44K SNP assay, 34 trait... | 0 |