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Oryza sativa QTL "AQDB005" (chlorophyll content)
| QTL Accession ID | AQDB005 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | CHLCN |
| Trait Name | chlorophyll content |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Biochemical |
| Chromosome | 9 |
| Comments | This locus had significant interaction (dominant by dominant) with another locus, AQDB004. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 20,481,606-20,482,185 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Pal/IR42 F2 QTL 1995 | BNL6.32 | 9 | 121.3-121.3 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDB005 | 9 | 121.3 | 121.3 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG667 | RFLP | Oryza sativa | qtl_marker |
| To | RG141 | RFLP | Oryza sativa | qtl_marker |
| To | RG570 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000495) | Wu-P et al., 1996 (IAGP) |
| Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Wu-P et al., 1996 (SM) |
Database Cross-References (1)
SNPs (2)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr9 | 20,481,606 | 20,482,185 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr9 | 20,481,606 | 20,482,185 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr9 | 20,481,606 | 20,482,185 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
| chr9 | 20,481,606 | 20,482,185 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
| chr9 | 20,481,606 | 20,482,185 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
