QTL Accession ID | AQDB004 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CHLCN |
Trait Name | chlorophyll content |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Biochemical |
Chromosome | 10 |
Comments | This locus had significant interaction (dominant by dominant) with another locus, AQDB005. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 16,619,676-16,622,241 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Pal/IR42 F2 QTL 1995 | BNL6.32 | 10 | 44.7-44.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDB004 | 10 | 44.7 | 44.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ625 | RFLP | Oryza sativa | qtl_marker |
To | CDO98 | RFLP | Avena sativa | qtl_marker |
To | RZ337 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000495) | Wu-P et al., 1996 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Wu-P et al., 1996 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr10 | 16,619,676 | 16,622,241 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
chr10 | 16,619,676 | 16,622,241 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr10 | 16,619,676 | 16,622,241 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
chr10 | 16,619,676 | 16,622,241 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
chr10 | 16,619,676 | 16,622,241 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |