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Oryza sativa QTL "AQDB003" (chlorophyll content)
| QTL Accession ID | AQDB003 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | CHLCN |
| Trait Name | chlorophyll content |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Biochemical |
| Chromosome | 2 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 27,482,581-28,690,518 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Pal/IR42 F2 QTL 1995 | BNL6.32 | 2 | 106.9-116.7 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDB003 | 2 | 106.9 | 116.7 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ58 | RFLP | Oryza sativa | qtl_marker |
| To | RG102 | RFLP | Oryza sativa | qtl_marker |
| To | RG139 | RFLP | Oryza sativa | qtl_marker |
| To | RZ166 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000495) | Wu-P et al., 1996 (IAGP) |
| Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Wu-P et al., 1996 (SM) |
Database Cross-References (1)
SNPs (2,030)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr2 | 27,482,581 | 28,690,518 | ~160K SNPs x 20 accessions (McNally 2... | 406 | Search for SNPs |
| chr2 | 27,482,581 | 28,690,518 | '1536 chip' - 1311 SNPs x 395 rice ac... | 3 | Search for SNPs |
| chr2 | 27,482,581 | 28,690,518 | Huang X, et al, Nat Genetics 2010 Nov... | 760 | Search for SNPs |
| chr2 | 27,482,581 | 28,690,518 | RiceDiversity 44K SNP assay, 34 trait... | 760 | Search for SNPs |
| chr2 | 27,482,581 | 28,690,518 | RiceDiversity 44K SNP assay, 34 trait... | 101 | Search for SNPs |
