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Oryza sativa QTL "AQD039" (relative water content)
| QTL Accession ID | AQD039 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | RELWCN | ||||
| Trait Name | relative water content | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Abiotic stress | ||||
| Chromosome | 1 | ||||
| Comments | Related with water stress tolerance. Based on average data of all experiments. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 37,713,253-39,688,417 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Aberdeen Bala/Azu QTL 2002 | BNL6.32 | 1 | 221.9-221.9 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQD039 | 1 | 221.9 | 221.9 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C949 | RFLP | Oryza sativa | qtl_marker |
| To | C86 | RFLP | Oryza sativa | qtl_marker |
| To | RZ14 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000136) | Price-A-H et al., 2002 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Price-A-H et al., 2002 (SM) |
Database Cross-References (1)
SNPs (7,818)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 37,713,253 | 39,688,417 | ~160K SNPs x 20 accessions (McNally 2... | 1,416 | Search for SNPs |
| chr1 | 37,713,253 | 39,688,417 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
| chr1 | 37,713,253 | 39,688,417 | Huang X, et al, Nat Genetics 2010 Nov... | 3,063 | Search for SNPs |
| chr1 | 37,713,253 | 39,688,417 | RiceDiversity 44K SNP assay, 34 trait... | 3,063 | Search for SNPs |
| chr1 | 37,713,253 | 39,688,417 | RiceDiversity 44K SNP assay, 34 trait... | 269 | Search for SNPs |
