QTL Accession ID | AQD034 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | RELWCN | ||||
Trait Name | relative water content | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Abiotic stress | ||||
Chromosome | 5 | ||||
Comments | Related with water stress tolerance. Based on data of experiment at Warda in 1998. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 21,372,057-22,204,192 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Aberdeen Bala/Azu QTL 2002 | BNL6.32 | 5a | 94.6-106.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQD034 | 5 | 94.6 | 106.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C624 | RFLP | Oryza sativa | qtl_marker |
To | C43 | RFLP | Oryza sativa | qtl_marker |
To | RG13 | RFLP | Oryza sativa | qtl_marker |
To | RZ70 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000136) | Price-A-H et al., 2002 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Price-A-H et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 21,372,057 | 22,204,192 | ~160K SNPs x 20 accessions (McNally 2... | 498 | Search for SNPs |
chr5 | 21,372,057 | 22,204,192 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
chr5 | 21,372,057 | 22,204,192 | Huang X, et al, Nat Genetics 2010 Nov... | 1,300 | Search for SNPs |
chr5 | 21,372,057 | 22,204,192 | RiceDiversity 44K SNP assay, 34 trait... | 1,300 | Search for SNPs |
chr5 | 21,372,057 | 22,204,192 | RiceDiversity 44K SNP assay, 34 trait... | 82 | Search for SNPs |