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Oryza sativa QTL "AQD028" (leaf drying)
| QTL Accession ID | AQD028 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | LFDRY |
| Trait Name | leaf drying |
| Published Symbol | |
| Trait Synonym(s) |
LD leaf drying |
| Trait Category | Abiotic stress |
| Chromosome | 3 |
| Comments | Related with water stress tolerance. Based on average data of experiments at IRRI in both of 1996 and 1998. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 30,719,906-34,231,482 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Aberdeen Bala/Azu QTL 2002 | BNL6.32 | 3 | 188.9-214.4 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQD028 | 3 | 188.9 | 214.4 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R1618 | RFLP | Oryza sativa | qtl_marker |
| To | G164 | RFLP | Oryza sativa | qtl_marker |
| To | C136 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000446) | Price-A-H et al., 2002 (IAGP) |
| Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Price-A-H et al., 2002 (SM) |
Database Cross-References (1)
SNPs (17,110)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 30,719,906 | 34,231,482 | ~160K SNPs x 20 accessions (McNally 2... | 2,083 | Search for SNPs |
| chr3 | 30,719,906 | 34,231,482 | '1536 chip' - 1311 SNPs x 395 rice ac... | 10 | Search for SNPs |
| chr3 | 30,719,906 | 34,231,482 | Huang X, et al, Nat Genetics 2010 Nov... | 7,332 | Search for SNPs |
| chr3 | 30,719,906 | 34,231,482 | RiceDiversity 44K SNP assay, 34 trait... | 7,332 | Search for SNPs |
| chr3 | 30,719,906 | 34,231,482 | RiceDiversity 44K SNP assay, 34 trait... | 353 | Search for SNPs |
