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Oryza sativa QTL "AQCY100" (filled grain number)
| QTL Accession ID | AQCY100 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | FGRNB | ||||
| Trait Name | filled grain number | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||
| Chromosome | 6 | ||||
| Comments | This locus had significant digenic interaction of AA type (additive by additive) with another locus, AQCY101. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 6,485,450-6,485,728 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 6 | 75.5-75.5 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCY100 | 6 | 75.5 | 75.5 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | Y4073L | RFLP | Oryza sativa | qtl_marker |
| To | R2147 | RFLP | Oryza sativa | qtl_marker |
| To | G200 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000447) | Hua-J et al., 2003 (IAGP) |
| Plant Structure | (PO:0009001) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Hua-J et al., 2003 (SM) |
Database Cross-References (1)
SNPs (7)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 6,485,450 | 6,485,728 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
| chr6 | 6,485,450 | 6,485,728 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr6 | 6,485,450 | 6,485,728 | Huang X, et al, Nat Genetics 2010 Nov... | 3 | Search for SNPs |
| chr6 | 6,485,450 | 6,485,728 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
| chr6 | 6,485,450 | 6,485,728 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
