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Oryza sativa QTL "AQCW016" (H2O2 content)
| QTL Accession ID | AQCW016 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | H2O2CN |
| Trait Name | H2O2 content |
| Published Symbol | |
| Trait Synonym(s) | hydrogen peroxide |
| Trait Category | Biochemical |
| Chromosome | 11 |
| Comments | Hydrogen peroxide induces plants to respond to environment stress by regulation of the second messenger system. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 19,563,844-20,012,442 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 11 | 80.2-80.2 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCW016 | 11 | 80.2 | 80.2 |
Associated Markers (9)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C1172 | RFLP | Oryza sativa | qtl_marker |
| To | S11988 | RFLP | Oryza sativa | qtl_marker |
| To | C12709S | RFLP | Oryza sativa | qtl_marker |
| To | C10775S | RFLP | Oryza sativa | qtl_marker |
| To | R3341 | RFLP | Oryza sativa | qtl_marker |
| To | CSU166 | RFLP | Zea mays subsp. mays | qtl_marker |
| To | PSR1871 | RFLP | Triticum aestivum | qtl_marker |
| To | CSU64 | RFLP | Zea mays subsp. mays | qtl_marker |
| To | C11521S | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (9)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000605) | Yang-Q-H et al., 2003 (IAGP) |
| Plant Structure | (PO:0009025) | Yang-Q-H et al., 2003 (SM) |
| (PO:0000003) | Gramene curators, 2007 (IC) | |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0009012) | Yang-Q-H et al., 2003 (SM) |
| (PO:0007033) | Yang-Q-H et al., 2003 (SM) | |
| Growth Stage | (GRO:0007001) | Yang-Q-H et al., 2003 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Yang-Q-H et al., 2003 (SM) |
Database Cross-References (1)
SNPs (3,894)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr11 | 19,563,844 | 20,012,442 | ~160K SNPs x 20 accessions (McNally 2... | 202 | Search for SNPs |
| chr11 | 19,563,844 | 20,012,442 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
| chr11 | 19,563,844 | 20,012,442 | Huang X, et al, Nat Genetics 2010 Nov... | 1,827 | Search for SNPs |
| chr11 | 19,563,844 | 20,012,442 | RiceDiversity 44K SNP assay, 34 trait... | 1,827 | Search for SNPs |
| chr11 | 19,563,844 | 20,012,442 | RiceDiversity 44K SNP assay, 34 trait... | 37 | Search for SNPs |
