QTL Accession ID | AQCW015 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CHLCN |
Trait Name | chlorophyll content |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Biochemical |
Chromosome | 6 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 6,822,035-8,066,358 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 6 | 38.3-51 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCW015 | 6 | 38.3 | 51 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C1478 | RFLP | Oryza sativa | qtl_marker |
To | PgibA | RFLP | Oryza sativa | qtl_marker |
To | S913 | RFLP | Oryza sativa | qtl_marker |
To | R2171 | RFLP | Oryza sativa | qtl_marker |
To | S11149 | RFLP | Oryza sativa | qtl_marker |
To | E11025 | RFLP | Oryza sativa | qtl_marker |
To | RZ144 | RFLP | Oryza sativa | qtl_marker |
To | E231 | RFLP | Oryza sativa | qtl_marker |
To | Y4836L | RFLP | Oryza sativa | qtl_marker |
To | R1679 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000495) | Yang-Q-H et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Yang-Q-H et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Yang-Q-H et al., 2003 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Yang-Q-H et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yang-Q-H et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 6,822,035 | 8,066,358 | ~160K SNPs x 20 accessions (McNally 2... | 874 | Search for SNPs |
chr6 | 6,822,035 | 8,066,358 | '1536 chip' - 1311 SNPs x 395 rice ac... | 8 | Search for SNPs |
chr6 | 6,822,035 | 8,066,358 | Huang X, et al, Nat Genetics 2010 Nov... | 4,514 | Search for SNPs |
chr6 | 6,822,035 | 8,066,358 | RiceDiversity 44K SNP assay, 34 trait... | 4,514 | Search for SNPs |
chr6 | 6,822,035 | 8,066,358 | RiceDiversity 44K SNP assay, 34 trait... | 152 | Search for SNPs |